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Download Now (10.97 MB) GPL Downloads till now: 7 |
| Size: | 10.97 MB |
| Last Update: | 2008-02-03 06:01:43 |
| Version: | 1.5.1 |
| OS Support: | 10.97 MB |
| License/Program Type: | GPL |
| Publisher: | Konrad Bussow |
| Price: | $0.00 |
ORFprimer is a Java Application for automatical primer design.
It is based on our previously released software ORFer that reads
the GenBank XML- and fasta- sequence format.
Protein sequences are typically downloaded by simply specifying
the GI identifier or accession number of the corresponding protein
target. ORFer will extract the open reading frame from the
requested protein sequences and display it.
ORFprimer automatically calculates PCR primers for these
sequences. The handling of ORFprimer is intuitional and quite
simple using the default settings.
In addition it provides many possibilities to change the
calculation options before and also after the computation of
primers, such as:
· shift of the primers position,
· change of the desired melting temperature,
· change of the restriction sites in the primers
sequences.
This way ORFprimer combines adaptability and convenience in one
program which makes it a powerful software tool.
ORFprimer provides a database interface that allows to store
the retrieved sequences in a local SQL database. This database can
be set up by using the scripts of the ORFprimer installation
package. At the moment MySQL, Oracle and Microsoft Access are
supported.
Here are some key features of
"ORFprimer":
Simple usage:
· ORFprimer is almost self-explanatory
· The graphical user interface (GUI) simplyfies the
handling.
Compatibility:
· ORFprimer was implemented in Java
· ORFprimer is platform independent
· ORFprimer can be executed on different machines:
Windows, Linux, Mac, Unix,...
Online accessibility:
· The Java Web Start Technology allows to start
ORFprimer via internet
· Explicit download and installation procedure are not
necessary.
Data management:
· ORFprimer includes tools to set up your own
database.
· Concurrently (MySQL,Oracle and Micosoft Access) are
supported.
· Alternatively, the data can be written to files (e.g.
fasta format).
High throughput computation:
· ORFprimer can be used to compute primers for up to
thousands of target sequences.
· This procedure can be automated furthermore by reading
the targets through text files.
| Product | Date Added |
|---|---|
| ORFprimer 1.5.1 | 2008-02-03 06:01:43 |
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